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Severity: Warning

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Filename: controllers/Result_pages.php

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Backtrace:

File: /data/webapp/var/www/html/ESCCdb/application/controllers/Result_pages.php
Line: 93
Function: exec

File: /data/webapp/var/www/html/ESCCdb/application/controllers/Result_pages.php
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Function: drawMutations

File: /data/webapp/var/www/html/ESCCdb/index.php
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Severity: Warning

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Filename: controllers/Result_pages.php

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Backtrace:

File: /data/webapp/var/www/html/ESCCdb/application/controllers/Result_pages.php
Line: 97
Function: exec

File: /data/webapp/var/www/html/ESCCdb/application/controllers/Result_pages.php
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Function: drawMutations

File: /data/webapp/var/www/html/ESCCdb/index.php
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Function: require_once

Multi-Omics Database of ESCC

 

GK

 

Full name: glycerol kinase Alias Symbol: GK1|GKD
Type: protein-coding gene Cytoband: Xp21.2
Entrez ID: 2710 HGNC ID: HGNC:4289 Ensembl Gene: ENSG00000198814 OMIM ID: 300474
Drug and gene relationship at DGIdb

 

GK involved pathways:

KEGG pathway Description View
hsa03320PPAR signaling pathway

 

Expression of GK:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 GK 2710 217167_x_at -0.0021 0.9985
GSE20347 GK 2710 214681_at -0.3232 0.0222
GSE26886 GK 2710 217167_x_at -0.5735 0.0025
GSE29001 GK 2710 217167_x_at -0.2327 0.0936
GSE38129 GK 2710 214681_at -0.2380 0.0915
GSE45670 GK 2710 215977_x_at 0.4883 0.0153
GSE53622 GK 2710 16383 0.9209 0.0001
GSE53624 GK 2710 16383 0.3019 0.0087
GSE63941 GK 2710 217167_x_at -1.3833 0.0156
GSE77861 GK 2710 215977_x_at -0.2151 0.3555
GSE97050 GK 2710 A_32_P172848 0.8186 0.1791
SRP007169 GK 2710 RNAseq -0.7714 0.0195
SRP008496 GK 2710 RNAseq -1.1154 0.0000
SRP064894 GK 2710 RNAseq 0.4388 0.1900
SRP133303 GK 2710 RNAseq 0.8864 0.0002
SRP159526 GK 2710 RNAseq -0.5972 0.1223
SRP193095 GK 2710 RNAseq -0.1214 0.5786
SRP219564 GK 2710 RNAseq 0.6731 0.2615
TCGA GK 2710 RNAseq 0.2031 0.0866

Upregulated datasets: 0; Downregulated datasets: 2.  


 

Survival by GK expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  


Copy number change of GK:

 

No record found for this gene.


 

Somatic mutations of GK:

 

Generating mutation plots.

 

Highly correlated genes for GK:

 

Showing top 20/278 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
GKTTC39C0.786077303
GKLZTS10.734206303
GKAPBB1IP0.730645303
GKRNF1830.724096303
GKCPA20.705523303
GKCD79B0.702447403
GKIKZF30.698782303
GKCCR20.693427404
GKSERPINA10.691273303
GKIL10RB0.675825504
GKP2RY130.672905404
GKCXCR60.671871404
GKSEC61B0.667019403
GKBCL2L10.666395303
GKCD79A0.664902303
GKIRF40.664815403
GKGABRR20.662147303
GKOSBPL80.658471303
GKIL1R10.656093403
GKCYP7B10.654692404

For details and further investigation, click here