| Full name: long intergenic non-protein coding RNA 173 | Alias Symbol: FLJ42957 | ||
| Type: non-coding RNA | Cytoband: 12q24.22 | ||
| Entrez ID: 100287569 | HGNC ID: HGNC:33791 | Ensembl Gene: ENSG00000196668 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00173:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00173 | 100287569 | 237591_at | -0.3137 | 0.7096 | |
| GSE26886 | LINC00173 | 100287569 | 237591_at | 1.0683 | 0.0363 | |
| GSE45670 | LINC00173 | 100287569 | 237591_at | 0.0278 | 0.9585 | |
| GSE53622 | LINC00173 | 100287569 | 7976 | 0.3336 | 0.0054 | |
| GSE53624 | LINC00173 | 100287569 | 7976 | 0.1454 | 0.1917 | |
| GSE63941 | LINC00173 | 100287569 | 237591_at | 1.1000 | 0.1767 | |
| GSE77861 | LINC00173 | 100287569 | 237591_at | 0.7185 | 0.0743 | |
| SRP133303 | LINC00173 | 100287569 | RNAseq | -0.7247 | 0.0131 | |
| SRP159526 | LINC00173 | 100287569 | RNAseq | 0.7340 | 0.4174 | |
| SRP219564 | LINC00173 | 100287569 | RNAseq | -0.9868 | 0.3213 |
Upregulated datasets: 1; Downregulated datasets: 0.
Survival by LINC00173 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC00173:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00173 | 100287569 | 4 | 3 | 23 | |
| GSE20123 | LINC00173 | 100287569 | 4 | 3 | 23 | |
| GSE43470 | LINC00173 | 100287569 | 2 | 0 | 41 | |
| GSE46452 | LINC00173 | 100287569 | 9 | 1 | 49 | |
| GSE47630 | LINC00173 | 100287569 | 9 | 3 | 28 | |
| GSE54993 | LINC00173 | 100287569 | 0 | 5 | 65 | |
| GSE54994 | LINC00173 | 100287569 | 6 | 5 | 42 | |
| GSE60625 | LINC00173 | 100287569 | 0 | 0 | 11 | |
| GSE74703 | LINC00173 | 100287569 | 2 | 0 | 34 | |
| GSE74704 | LINC00173 | 100287569 | 2 | 2 | 16 | |
| TCGA | LINC00173 | 100287569 | 23 | 9 | 64 |
Total number of gains: 61; Total number of losses: 31; Total Number of normals: 396.
Somatic mutations of LINC00173:
Generating mutation plots.
Highly correlated genes for LINC00173:
Showing top 20/33 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00173 | LEMD1 | 0.696203 | 4 | 0 | 4 |
| LINC00173 | LAMTOR4 | 0.675082 | 3 | 0 | 3 |
| LINC00173 | GTF3C2 | 0.646194 | 3 | 0 | 3 |
| LINC00173 | MUTYH | 0.627573 | 3 | 0 | 3 |
| LINC00173 | PRIM1 | 0.624619 | 3 | 0 | 3 |
| LINC00173 | PAN2 | 0.621627 | 3 | 0 | 3 |
| LINC00173 | FAM50A | 0.607789 | 3 | 0 | 3 |
| LINC00173 | SBSPON | 0.60722 | 3 | 0 | 3 |
| LINC00173 | NTRK2 | 0.6038 | 5 | 0 | 3 |
| LINC00173 | TMEM60 | 0.598819 | 3 | 0 | 3 |
| LINC00173 | SPAST | 0.593013 | 3 | 0 | 3 |
| LINC00173 | ANKRD23 | 0.592934 | 3 | 0 | 3 |
| LINC00173 | ADD3 | 0.588474 | 3 | 0 | 3 |
| LINC00173 | STIM2 | 0.58093 | 3 | 0 | 3 |
| LINC00173 | ENOX2 | 0.567687 | 3 | 0 | 3 |
| LINC00173 | GSAP | 0.563833 | 4 | 0 | 3 |
| LINC00173 | FGD6 | 0.557124 | 3 | 0 | 3 |
| LINC00173 | ITPKB | 0.552946 | 3 | 0 | 3 |
| LINC00173 | ETV5 | 0.552388 | 5 | 0 | 3 |
| LINC00173 | CEP68 | 0.551295 | 5 | 0 | 3 |
For details and further investigation, click here
