| Full name: long intergenic non-protein coding RNA 597 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 15q23-q24 | ||
| Entrez ID: 81698 | HGNC ID: HGNC:1193 | Ensembl Gene: | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC00597:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC00597 | 81698 | 208109_s_at | 0.3239 | 0.4254 | |
| GSE20347 | LINC00597 | 81698 | 208109_s_at | 0.4938 | 0.0031 | |
| GSE23400 | LINC00597 | 81698 | 208109_s_at | 0.0348 | 0.3153 | |
| GSE26886 | LINC00597 | 81698 | 208109_s_at | 0.6217 | 0.0098 | |
| GSE29001 | LINC00597 | 81698 | 208109_s_at | 0.1559 | 0.5780 | |
| GSE38129 | LINC00597 | 81698 | 208109_s_at | 0.2261 | 0.1774 | |
| GSE45670 | LINC00597 | 81698 | 208109_s_at | -0.0151 | 0.9636 | |
| GSE63941 | LINC00597 | 81698 | 208109_s_at | -3.4016 | 0.0000 | |
| GSE77861 | LINC00597 | 81698 | 208109_s_at | 0.1624 | 0.2381 | |
| SRP133303 | LINC00597 | 81698 | RNAseq | 0.1608 | 0.5296 |
Upregulated datasets: 0; Downregulated datasets: 1.
Copy number change of LINC00597:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC00597 | 81698 | 7 | 2 | 21 | |
| GSE20123 | LINC00597 | 81698 | 7 | 2 | 21 | |
| GSE43470 | LINC00597 | 81698 | 4 | 5 | 34 | |
| GSE46452 | LINC00597 | 81698 | 3 | 7 | 49 | |
| GSE47630 | LINC00597 | 81698 | 8 | 10 | 22 | |
| GSE54993 | LINC00597 | 81698 | 5 | 6 | 59 | |
| GSE54994 | LINC00597 | 81698 | 5 | 6 | 42 | |
| GSE60625 | LINC00597 | 81698 | 4 | 0 | 7 | |
| GSE74703 | LINC00597 | 81698 | 4 | 3 | 29 | |
| GSE74704 | LINC00597 | 81698 | 4 | 2 | 14 |
Total number of gains: 51; Total number of losses: 43; Total Number of normals: 298.
Somatic mutations of LINC00597:
Generating mutation plots.
Highly correlated genes for LINC00597:
Showing top 20/177 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC00597 | CHSY3 | 0.71356 | 3 | 0 | 3 |
| LINC00597 | GNG11 | 0.69896 | 3 | 0 | 3 |
| LINC00597 | ZNF469 | 0.697243 | 3 | 0 | 3 |
| LINC00597 | PRRX1 | 0.680532 | 4 | 0 | 4 |
| LINC00597 | RBM41 | 0.679723 | 4 | 0 | 3 |
| LINC00597 | GLI2 | 0.679421 | 3 | 0 | 3 |
| LINC00597 | E2F3 | 0.670669 | 3 | 0 | 3 |
| LINC00597 | NBPF20 | 0.669943 | 3 | 0 | 3 |
| LINC00597 | IFNAR2 | 0.666064 | 3 | 0 | 3 |
| LINC00597 | SPOCD1 | 0.663756 | 3 | 0 | 3 |
| LINC00597 | ABCC1 | 0.661403 | 3 | 0 | 3 |
| LINC00597 | ABCC4 | 0.659483 | 3 | 0 | 3 |
| LINC00597 | PHIP | 0.645642 | 3 | 0 | 3 |
| LINC00597 | TMEM140 | 0.641978 | 4 | 0 | 4 |
| LINC00597 | LAYN | 0.641916 | 4 | 0 | 3 |
| LINC00597 | LTBP2 | 0.637219 | 4 | 0 | 3 |
| LINC00597 | PDGFRB | 0.634138 | 5 | 0 | 3 |
| LINC00597 | MMP3 | 0.632635 | 5 | 0 | 3 |
| LINC00597 | ACSL4 | 0.63259 | 3 | 0 | 3 |
| LINC00597 | APP | 0.630693 | 3 | 0 | 3 |
For details and further investigation, click here
