| Full name: long intergenic non-protein coding RNA 1139 | Alias Symbol: LINK-A|TCONS_00000027 | ||
| Type: non-coding RNA | Cytoband: 1q43 | ||
| Entrez ID: 339535 | HGNC ID: HGNC:27924 | Ensembl Gene: ENSG00000215808 | OMIM ID: |
| Drug and gene relationship at DGIdb | |||
Expression of LINC01139:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | LINC01139 | 339535 | 235599_at | 0.6967 | 0.4059 | |
| GSE26886 | LINC01139 | 339535 | 235599_at | 0.9010 | 0.0554 | |
| GSE45670 | LINC01139 | 339535 | 235599_at | 0.7373 | 0.0068 | |
| GSE53622 | LINC01139 | 339535 | 110489 | 1.3612 | 0.0001 | |
| GSE53624 | LINC01139 | 339535 | 110489 | 1.5105 | 0.0000 | |
| GSE63941 | LINC01139 | 339535 | 235599_at | 0.4176 | 0.4851 | |
| GSE77861 | LINC01139 | 339535 | 235599_at | 0.3315 | 0.3164 | |
| SRP133303 | LINC01139 | 339535 | RNAseq | 0.7974 | 0.0280 |
Upregulated datasets: 2; Downregulated datasets: 0.
Survival by LINC01139 expression:
 |  |
| GSE53622 | GSE53624 |
Note: Click image to view full size file.
Copy number change of LINC01139:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | LINC01139 | 339535 | 9 | 2 | 19 | |
| GSE20123 | LINC01139 | 339535 | 9 | 2 | 19 | |
| GSE43470 | LINC01139 | 339535 | 7 | 1 | 35 | |
| GSE46452 | LINC01139 | 339535 | 4 | 2 | 53 | |
| GSE47630 | LINC01139 | 339535 | 15 | 0 | 25 | |
| GSE54993 | LINC01139 | 339535 | 0 | 6 | 64 | |
| GSE54994 | LINC01139 | 339535 | 15 | 0 | 38 | |
| GSE60625 | LINC01139 | 339535 | 0 | 0 | 11 | |
| GSE74703 | LINC01139 | 339535 | 7 | 1 | 28 | |
| GSE74704 | LINC01139 | 339535 | 3 | 1 | 16 |
Total number of gains: 69; Total number of losses: 15; Total Number of normals: 308.
Somatic mutations of LINC01139:
Generating mutation plots.
Highly correlated genes for LINC01139:
Showing top 20/40 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| LINC01139 | RCN2 | 0.732464 | 3 | 0 | 3 |
| LINC01139 | ASTN2 | 0.688286 | 3 | 0 | 3 |
| LINC01139 | GLS2 | 0.684294 | 3 | 0 | 3 |
| LINC01139 | SOX2-OT | 0.670471 | 4 | 0 | 4 |
| LINC01139 | FUT8 | 0.645633 | 3 | 0 | 3 |
| LINC01139 | RPS19BP1 | 0.640258 | 3 | 0 | 3 |
| LINC01139 | KCNMB3 | 0.613653 | 3 | 0 | 3 |
| LINC01139 | ABCC5 | 0.610371 | 3 | 0 | 3 |
| LINC01139 | CLDN20 | 0.605533 | 5 | 0 | 4 |
| LINC01139 | CREM | 0.593932 | 3 | 0 | 3 |
| LINC01139 | LSM6 | 0.59103 | 3 | 0 | 3 |
| LINC01139 | DAP | 0.590941 | 4 | 0 | 3 |
| LINC01139 | SLC35G1 | 0.589201 | 3 | 0 | 3 |
| LINC01139 | TNFRSF11B | 0.58332 | 4 | 0 | 3 |
| LINC01139 | ADH5 | 0.582806 | 3 | 0 | 3 |
| LINC01139 | TSPAN9 | 0.5811 | 4 | 0 | 3 |
| LINC01139 | C12orf57 | 0.573804 | 4 | 0 | 3 |
| LINC01139 | UTP18 | 0.569658 | 3 | 0 | 3 |
| LINC01139 | SORL1 | 0.569542 | 4 | 0 | 3 |
| LINC01139 | ZNF18 | 0.563539 | 3 | 0 | 3 |
For details and further investigation, click here
