RAPGEFL1

 

Full name: Rap guanine nucleotide exchange factor like 1 Alias Symbol: Link-GEFII
Type: protein-coding gene Cytoband: 17q21.1
Entrez ID: 51195 HGNC ID: HGNC:17428 Ensembl Gene: ENSG00000108352 OMIM ID: 
Drug and gene relationship at DGIdb

 

Expression of RAPGEFL1:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 RAPGEFL1 51195 218657_at -0.3505 0.5940
GSE20347 RAPGEFL1 51195 218657_at -1.2300 0.0002
GSE23400 RAPGEFL1 51195 218657_at -1.0874 0.0000
GSE26886 RAPGEFL1 51195 218657_at -1.6834 0.0001
GSE29001 RAPGEFL1 51195 218657_at -1.1454 0.0027
GSE38129 RAPGEFL1 51195 218657_at -0.5963 0.2470
GSE45670 RAPGEFL1 51195 218657_at -0.4582 0.0835
GSE53622 RAPGEFL1 51195 115234 -1.2087 0.0000
GSE53624 RAPGEFL1 51195 115234 -1.5638 0.0000
GSE63941 RAPGEFL1 51195 218657_at 1.3433 0.0692
GSE77861 RAPGEFL1 51195 218657_at -0.3678 0.4562
GSE97050 RAPGEFL1 51195 A_23_P152970 -0.2025 0.6260
SRP007169 RAPGEFL1 51195 RNAseq -1.5332 0.0012
SRP008496 RAPGEFL1 51195 RNAseq -1.8665 0.0000
SRP064894 RAPGEFL1 51195 RNAseq -1.7777 0.0000
SRP133303 RAPGEFL1 51195 RNAseq -1.7041 0.0000
SRP159526 RAPGEFL1 51195 RNAseq -1.3354 0.0430
SRP193095 RAPGEFL1 51195 RNAseq -1.5564 0.0000
SRP219564 RAPGEFL1 51195 RNAseq -1.8359 0.0565
TCGA RAPGEFL1 51195 RNAseq 0.3113 0.0294

Upregulated datasets: 0; Downregulated datasets: 12.  


 

Survival by RAPGEFL1 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  


Copy number change of RAPGEFL1:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 RAPGEFL1 51195 8 1 21
GSE20123 RAPGEFL1 51195 8 1 21
GSE43470 RAPGEFL1 51195 1 2 40
GSE46452 RAPGEFL1 51195 34 0 25
GSE47630 RAPGEFL1 51195 8 1 31
GSE54993 RAPGEFL1 51195 3 4 63
GSE54994 RAPGEFL1 51195 8 5 40
GSE60625 RAPGEFL1 51195 4 0 7
GSE74703 RAPGEFL1 51195 1 1 34
GSE74704 RAPGEFL1 51195 5 1 14
TCGA RAPGEFL1 51195 22 8 66

Total number of gains: 102; Total number of losses: 24; Total Number of normals: 362.  


 

Somatic mutations of RAPGEFL1:

 

Generating mutation plots.

 

Highly correlated genes for RAPGEFL1:

 

Showing top 20/1196 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
RAPGEFL1GRHL10.759428707
RAPGEFL1SH2D3A0.752435404
RAPGEFL1CYP2C90.74724410010
RAPGEFL1CKMT1A0.745508303
RAPGEFL1SLC9A3R10.74342213012
RAPGEFL1EVPL0.74258313013
RAPGEFL1ZDHHC130.7409711011
RAPGEFL1FAT20.740918404
RAPGEFL1ARHGAP320.73558211011
RAPGEFL1EPS8L20.73437610010
RAPGEFL1UPK3B0.732934303
RAPGEFL1ZDHHC50.731135606
RAPGEFL1ARAP20.730754303
RAPGEFL1DGKA0.72816212011
RAPGEFL1PITX10.72756212012
RAPGEFL1RARG0.72559612012
RAPGEFL1PRRG40.7244111011
RAPGEFL1CYP2C180.72427210010
RAPGEFL1SPRR2B0.723268303
RAPGEFL1FAM135A0.721729807

For details and further investigation, click here