| Full name: T cell receptor gamma locus antisense RNA 1 | Alias Symbol: | ||
| Type: non-coding RNA | Cytoband: 7p14.1 | ||
| Entrez ID: 100506776 | HGNC ID: HGNC:48974 | Ensembl Gene: ENSG00000281103 | OMIM ID: |
Expression of TRG-AS1:
| Dataset | Gene | EntrezID | Probe | Log2FC | Adj.pValue | Expression |
|---|---|---|---|---|---|---|
| GSE17351 | TRG-AS1 | 100506776 | 239237_at | 0.2213 | 0.8168 | |
| GSE26886 | TRG-AS1 | 100506776 | 239237_at | -0.5766 | 0.0054 | |
| GSE45670 | TRG-AS1 | 100506776 | 239237_at | -0.1073 | 0.6494 | |
| GSE63941 | TRG-AS1 | 100506776 | 239237_at | 0.1386 | 0.4633 | |
| GSE77861 | TRG-AS1 | 100506776 | 239237_at | -0.1483 | 0.1463 | |
| SRP007169 | TRG-AS1 | 100506776 | RNAseq | -1.2643 | 0.0329 | |
| SRP064894 | TRG-AS1 | 100506776 | RNAseq | 0.0701 | 0.7950 | |
| SRP133303 | TRG-AS1 | 100506776 | RNAseq | 0.1033 | 0.4705 | |
| SRP159526 | TRG-AS1 | 100506776 | RNAseq | -0.3988 | 0.4425 | |
| SRP193095 | TRG-AS1 | 100506776 | RNAseq | -0.1348 | 0.3823 | |
| SRP219564 | TRG-AS1 | 100506776 | RNAseq | 0.3780 | 0.5127 |
Upregulated datasets: 0; Downregulated datasets: 1.
Copy number change of TRG-AS1:
| Dataset | Gene | EntrezID | Gain | Loss | Normal | Detail |
|---|---|---|---|---|---|---|
| GSE15526 | TRG-AS1 | 100506776 | 15 | 0 | 15 | |
| GSE20123 | TRG-AS1 | 100506776 | 14 | 0 | 16 | |
| GSE43470 | TRG-AS1 | 100506776 | 4 | 0 | 39 | |
| GSE46452 | TRG-AS1 | 100506776 | 11 | 1 | 47 | |
| GSE47630 | TRG-AS1 | 100506776 | 8 | 1 | 31 | |
| GSE54993 | TRG-AS1 | 100506776 | 0 | 7 | 63 | |
| GSE54994 | TRG-AS1 | 100506776 | 18 | 3 | 32 | |
| GSE60625 | TRG-AS1 | 100506776 | 0 | 0 | 11 | |
| GSE74703 | TRG-AS1 | 100506776 | 4 | 0 | 32 | |
| GSE74704 | TRG-AS1 | 100506776 | 8 | 0 | 12 |
Total number of gains: 82; Total number of losses: 12; Total Number of normals: 298.
Somatic mutations of TRG-AS1:
Generating mutation plots.
Highly correlated genes for TRG-AS1:
Showing top 20/78 corelated genes with mean PCC>0.5.
| Gene1 | Gene2 | Mean PCC | Num. Datasets | Num. PCC<0 | Num. PCC>0.5 |
|---|---|---|---|---|---|
| TRG-AS1 | TBC1D10C | 0.749641 | 3 | 0 | 3 |
| TRG-AS1 | INPP5D | 0.732971 | 4 | 0 | 4 |
| TRG-AS1 | PTPN22 | 0.729261 | 3 | 0 | 3 |
| TRG-AS1 | CD2 | 0.7223 | 4 | 0 | 4 |
| TRG-AS1 | BTLA | 0.717533 | 3 | 0 | 3 |
| TRG-AS1 | CD8A | 0.706923 | 4 | 0 | 4 |
| TRG-AS1 | GZMK | 0.70404 | 4 | 0 | 4 |
| TRG-AS1 | TRAF3IP3 | 0.696701 | 5 | 0 | 4 |
| TRG-AS1 | CD84 | 0.692751 | 4 | 0 | 4 |
| TRG-AS1 | PPP1R16B | 0.691696 | 3 | 0 | 3 |
| TRG-AS1 | SPOCK2 | 0.691232 | 3 | 0 | 3 |
| TRG-AS1 | CD48 | 0.684216 | 4 | 0 | 3 |
| TRG-AS1 | HCST | 0.677087 | 3 | 0 | 3 |
| TRG-AS1 | HLA-DRA | 0.676615 | 3 | 0 | 3 |
| TRG-AS1 | SIRPG | 0.675472 | 4 | 0 | 4 |
| TRG-AS1 | NKG7 | 0.673099 | 4 | 0 | 4 |
| TRG-AS1 | CXCR6 | 0.668818 | 4 | 0 | 4 |
| TRG-AS1 | PTPRC | 0.666194 | 3 | 0 | 3 |
| TRG-AS1 | CD3D | 0.665392 | 4 | 0 | 3 |
| TRG-AS1 | TRAT1 | 0.659967 | 4 | 0 | 3 |
For details and further investigation, click here
