SNRPD1

 

Full name: small nuclear ribonucleoprotein D1 polypeptide Alias Symbol: HsT2456|Sm-D1
Type: protein-coding gene Cytoband: 18q11.2
Entrez ID: 6632 HGNC ID: HGNC:11158 Ensembl Gene: ENSG00000167088 OMIM ID: 601063
Drug and gene relationship at DGIdb

 

Expression of SNRPD1:

 

Dataset Gene EntrezID Probe Log2FC Adj.pValue Expression
GSE17351 SNRPD1 6632 202690_s_at 0.5236 0.1379
GSE20347 SNRPD1 6632 202690_s_at 0.6283 0.0012
GSE23400 SNRPD1 6632 202690_s_at 0.9679 0.0000
GSE26886 SNRPD1 6632 202690_s_at 0.6927 0.0016
GSE29001 SNRPD1 6632 202690_s_at 0.6884 0.0274
GSE38129 SNRPD1 6632 202690_s_at 0.9293 0.0000
GSE45670 SNRPD1 6632 202690_s_at 0.7336 0.0000
GSE53622 SNRPD1 6632 142499 0.3418 0.0000
GSE53624 SNRPD1 6632 142499 0.7142 0.0000
GSE63941 SNRPD1 6632 202690_s_at 1.4451 0.0000
GSE77861 SNRPD1 6632 202690_s_at 0.3366 0.3278
GSE97050 SNRPD1 6632 A_23_P107644 0.3128 0.3550
SRP007169 SNRPD1 6632 RNAseq 0.9766 0.0056
SRP008496 SNRPD1 6632 RNAseq 0.5678 0.0442
SRP064894 SNRPD1 6632 RNAseq 0.4261 0.0495
SRP133303 SNRPD1 6632 RNAseq 0.5117 0.0016
SRP159526 SNRPD1 6632 RNAseq 0.6887 0.0007
SRP193095 SNRPD1 6632 RNAseq 0.1988 0.0583
SRP219564 SNRPD1 6632 RNAseq 0.5188 0.1303
TCGA SNRPD1 6632 RNAseq 0.3603 0.0000

Upregulated datasets: 1; Downregulated datasets: 0.  

 

Survival by SNRPD1 expression:

 

GSE53622GSE53624TCGA

 

Note: Click image to view full size file.  

Copy number change of SNRPD1:

 

Dataset Gene EntrezID Gain Loss Normal Detail
GSE15526 SNRPD1 6632 2 5 23
GSE20123 SNRPD1 6632 1 5 24
GSE43470 SNRPD1 6632 2 1 40
GSE46452 SNRPD1 6632 3 22 34
GSE47630 SNRPD1 6632 7 17 16
GSE54993 SNRPD1 6632 7 1 62
GSE54994 SNRPD1 6632 3 12 38
GSE60625 SNRPD1 6632 0 4 7
GSE74703 SNRPD1 6632 2 1 33
GSE74704 SNRPD1 6632 1 4 15
TCGA SNRPD1 6632 18 18 60

Total number of gains: 46; Total number of losses: 90; Total Number of normals: 352.  

 

Somatic mutations of SNRPD1:

 

Generating mutation plots.

 

Highly correlated genes for SNRPD1:

 

Showing top 20/1520 corelated genes with mean PCC>0.5.
Gene1 Gene2 Mean PCC Num. Datasets Num. PCC<0 Num. PCC>0.5
SNRPD1AURKB0.76227812011
SNRPD1CENPN0.76032812012
SNRPD1CKS1B0.75844112012
SNRPD1MCM40.75520212012
SNRPD1UBE2C0.74123812011
SNRPD1SPC250.74004711011
SNRPD1RNASEH2A0.73586412012
SNRPD1BUB1B0.7333710010
SNRPD1ECT20.73206512012
SNRPD1KIF2C0.72942812012
SNRPD1TPX20.72815812011
SNRPD1KIF18B0.7280851009
SNRPD1RFC40.7271512012
SNRPD1ILF20.72375810010
SNRPD1MYBL20.72285612011
SNRPD1UBE2T0.722814808
SNRPD1MCM70.72243812011
SNRPD1NUF20.720842808
SNRPD1FOXM10.72081312012
SNRPD1CDC200.71997412011

For details and further investigation, click here